Once the Bill have been paid, it is the time to mark it Paid in Adiuta. It is actually super simple to do that. Make sure you go to the Bills and then open it to view details. Then Click Record Payment.
Once clicked, you should have Payment Dialog popping up with a form to fill. Fill the information as required. Make sure the “Pay From” is set to the Account that was used to Pay the Bill. If the Vendor was paid by the Money in Bank, then set that Bank account. If it was from the cash at hand, then use Petty cash. Same should apply to any account you choose to pay from.
When done, click Mark Bill Paid, and if all is well filled, it should make the Bill paid and affect relevant accounts in your Books.